crisprSQL

Database for CRISPR/Sp-Cas9 off-target assays

Epigenetics Studies

We have annotated the cleavage data points with a choice of five epigenetic markers. The respective studies are linked below.
With these studies, we are able to check annotation for 97.1% of our cell-line data with at least two epigenetic markers, 79.7% with at least three epigenetic markers and 28.3% of our data with all five epigenetic markers.

No. study assay type cell line total matching targets annotated targets
1SCREEN ENCODE v4DNaseembryo00
2SCREEN ENCODE v4H3K4me3embryo00
3SCREEN ENCODE v4H3K4me3HAP177
4SCREEN ENCODE v4CTCFHEK2938282
5SCREEN ENCODE v4CTCFHeLa2020
6SCREEN ENCODE v4DNaseHeLa3634
7SCREEN ENCODE v4H3K4me3HeLa3731
8SCREEN ENCODE v4CTCFK5625050
9SCREEN ENCODE v4DNaseK5626363
10SCREEN ENCODE v4H3K4me3K5622828
11GSM2871902H3K4me3HAP11621
12GSE68948DRIPHEK29332540
13GSM683769RRBSHEK293325437
14GSM720354RRBSHEK293325444
15GSM720355RRBSHEK293325448
16GSM2711412H3K4me3HEK29332541594
17GSM2902639DNaseHEK29332541518
18ENCFF001TOLRRBSK562129914
19ENCFF001TOMRRBSK562129911
20GSM683780RRBSK562129911
21GSM683825RRBSK562129910
22GSM683856RRBSK562129914
23GSM1720619DRIPK5621299106
24GSE87831DNaseU2OS595093
25GSE87831DNaseU2OS595093
26GSM1296149CTCFU2OS59502151
27GSM1683507DRIPU2OS59500
28GSM3147770H3K4me3U2OS5950640
29GSM3196008DRIPU2OS5950357
30ENCFF813SKEDNaseHAP11620
31ENCFF944IGSDNaseHAP11620
32ENCFF018VMVCTCFHEK2933254190
33ENCFF127KSHDNaseHEK29332540
34ENCFF781HLMH3K4me3HEK293325429
35ENCFF781HLMH3K4me3HEK293325429
36ENCFF148POZH3K4me3K56212990
37ENCFF251TOGH3K4me3K56212990
38ENCFF500EUYH3K4me3K56212990
39ENCFF616DLOH3K4me3K56212990
40ENCFF718PBWDNaseK56212990
41ENCFF843VHCCTCFK56212990
42ENCFF875WSGDNaseK56212990
43ENCFF961SPZH3K4me3K56212990
44ENCFF001YOCDNaseembryo4260
45ENCFF940SWYDNaseembryo4260
46ENCFF041TGXDNaseembryo4260
47ENCFF357JNZH3K4me3embryo4260
48ENCFF940SWYCTCFembryo4260
49ENCFF915PWPCTCFHeLa3990
50ENCFF474KGTCTCFHeLa3990
51ENCFF001TMURRBSHeLa39910
52ENCFF001TMVRRBSHeLa3997
53ENCFF351NVFDNaseHeLa39922
54ENCFF982QSWH3K4me3HeLa39930
55ENCFF542GBRH3K4me3HeLa39931
56ENCFF201KBAH3K4me3HeLa39924
57ENCFF102MXIH3K4me3HeLa39923
58GSM2668157DRIPHeLa399223
59GSM2452072DRIPHeLa399363
60ENCFF331BAXCTCFHeLa3990
61ENCFF862FGBCTCFHeLa3990
62ENCFF095GJFDNaseHeLa3990
63ENCFF186BOUDNaseHeLa3990
64ENCFF879GTRDNaseHeLa3990
65ENCFF029YMXH3K4me3HeLa3990
66ENCFF850XBJH3K4me3HeLa3990
67ENCFF336AJXH3K4me3HeLa3990
68ENCFF479ZEPH3K4me3HeLa3990

crisprSQL is developed at Oxford University, 2020